SRX3041632
GSM2719135: CD4 input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4 T cells
tissue
CD4 T cells
strain
C57BL/6
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and GABPα-DNA complexes were isolated with anti-GABPα antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
162323865
Reads aligned (%)
93.3
Duplicates removed (%)
45.2
Number of peaks
1411 (qval < 1E-05)

mm9

Number of total reads
162323865
Reads aligned (%)
93.1
Duplicates removed (%)
45.2
Number of peaks
1581 (qval < 1E-05)

Base call quality data from DBCLS SRA