Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
MV-4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
MV-4-11-B cells
method
ChIP-seq
chip antibody
RNA Polymerase II (abcam, #ab5095)
treatment
DMSO
replicate
rep1
internal id
J5927

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared from 10 ng of ChIP material per sample. NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina (NEB #E6240L) and for the quantity measurement KAPA Library Quantification Kit (KapaBiosystems, #KK4824) was used according to the manufacturer’s instructions. 2 nM samples were multiplexed for sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

hg38

Number of total reads
34503076
Reads aligned (%)
99.0
Duplicates removed (%)
7.3
Number of peaks
4852 (qval < 1E-05)

hg19

Number of total reads
34503076
Reads aligned (%)
98.5
Duplicates removed (%)
8.2
Number of peaks
4841 (qval < 1E-05)

Base call quality data from DBCLS SRA