Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
MV-4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
MV-4-11-B cells
method
ChIP-seq
chip antibody
BRD4 (Bethyl, #A301-985A50)
treatment
BI00894999, 35nM, 4h
replicate
rep1
internal id
J2601, J2610

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
37104171
Reads aligned (%)
61.9
Duplicates removed (%)
32.0
Number of peaks
46229 (qval < 1E-05)

hg38

Number of total reads
37104171
Reads aligned (%)
63.1
Duplicates removed (%)
31.0
Number of peaks
46271 (qval < 1E-05)

Base call quality data from DBCLS SRA