SRX3025348
ChIP-seq of Mus musculus: +tam, SIG

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Lung
Cell type
Lung epithelium
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
sex
not collected
tissue
primary lung epithelial cultures
genotype
Sox2-SIG cells, +Tam, Sox2 ChIP
treatment
Tam, Sox2 ChIP
development stage
6-14 weeks

Sequenced DNA Library

library_name
tam, SIG cells, Sox2 ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36763431
Reads aligned (%)
22.3
Duplicates removed (%)
11.8
Number of peaks
10686 (qval < 1E-05)

mm9

Number of total reads
36763431
Reads aligned (%)
22.2
Duplicates removed (%)
12.1
Number of peaks
10645 (qval < 1E-05)

Base call quality data from DBCLS SRA