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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Lung epithelium
ATCC
MeSH
RIKEN BRC
SRX3025344
ChIP-seq of Mus musculus: +tam TTF1/SIG
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Lung
Cell type
Lung epithelium
NA
NA
Attributes by original data submitter
Sample
strain
C57BL/6
sex
not collected
tissue
primary lung epithelial cultures
genotype
TTF1 deleted, Sox2-SIG cells, +Tam, input control
treatment
Tam, input
development stage
6-14 weeks
Sequenced DNA Library
library_name
tam, TTF1/SIG cells, input control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
59264897
Reads aligned (%)
81.4
Duplicates removed (%)
11.7
Number of peaks
801 (qval < 1E-05)
mm9
Number of total reads
59264897
Reads aligned (%)
81.2
Duplicates removed (%)
11.6
Number of peaks
879 (qval < 1E-05)
Base call quality data from
DBCLS SRA