Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trl

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2-HA::AbdA Cell line
cell line
late embryo-derived cell line stably transfected with HA::AbdA
strain
S2-DRSC-HA::AbdA
genotype
HA::AbdA
treatment
10 microMolar Cu2SO4
chip antibody
GAGA (modENCODE; G. Cavalli)
input dna code
C

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was prepared according to the modENCODE procedure; RNA was extracted with Qiagen Rneasy kit DNA libraries were prepared according to Illumina's instructions; RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
46112529
Reads aligned (%)
99.3
Duplicates removed (%)
75.8
Number of peaks
10787 (qval < 1E-05)

dm6

Number of total reads
46112529
Reads aligned (%)
99.2
Duplicates removed (%)
75.8
Number of peaks
10901 (qval < 1E-05)

Base call quality data from DBCLS SRA