Antigen

Antigen Class

TFs and others

Antigen

Trl

Cell type

Cell type Class

Cell line

Cell type

S2

Source

Oregon R

Developmental Stage

late embryonic stage

Sample

source_name

S2 Cell line

cell line

late embryo-derived cell line

strain

S2-DRSC

genotype

wild type

treatment

10 microMolar Cu2SO4

chip antibody

GAGA (modENCODE; G. Cavalli)

input dna code

B

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatin was prepared according to the modENCODE procedure; RNA was extracted with Qiagen Rneasy kit DNA libraries were prepared according to Illumina's instructions; RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

dm3

Number of total reads

17027347

Reads aligned (%)

40.5

Duplicates removed (%)

58.9

Number of peaks

9481 (qval < 1E-05)

dm6

Number of total reads

17027347

Reads aligned (%)

39.5

Duplicates removed (%)

59.9

Number of peaks

8627 (qval < 1E-05)