Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trl

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 Cell line
cell line
late embryo-derived cell line
strain
S2-DRSC
genotype
wild type
treatment
10 microMolar Cu2SO4
chip antibody
GAGA (modENCODE; G. Cavalli)
input dna code
B

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was prepared according to the modENCODE procedure; RNA was extracted with Qiagen Rneasy kit DNA libraries were prepared according to Illumina's instructions; RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
17027347
Reads aligned (%)
40.5
Duplicates removed (%)
58.9
Number of peaks
9481 (qval < 1E-05)

dm6

Number of total reads
17027347
Reads aligned (%)
39.5
Duplicates removed (%)
59.9
Number of peaks
8627 (qval < 1E-05)

Base call quality data from DBCLS SRA