Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Blood

Cell type

DOHH-2

Primary Tissue

Blood

Site of Extraction

Effusion, Pleural

Tissue Diagnosis

Lymphoma B-cell

Sample

age

60 year

dev stage

adult

donor ID

ENCDO352AAA

sex

male

health state

refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma

sample type

immortalized cell line

cell line

DOHH2

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

46551191

Reads aligned (%)

89.5

Duplicates removed (%)

57.4

Number of peaks

38428 (qval < 1E-05)

hg19

Number of total reads

46551191

Reads aligned (%)

89.0

Duplicates removed (%)

58.6

Number of peaks

38252 (qval < 1E-05)