Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

dev stage
adult
sex
female
sample type
tissue
donor ID
ENCDO793LXB
age
53 year
lab
Bradley Bernstein, Broad
tissue
right lobe of liver

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
59962289
Reads aligned (%)
94.4
Duplicates removed (%)
6.9
Number of peaks
1605 (qval < 1E-05)

hg19

Number of total reads
59962289
Reads aligned (%)
93.3
Duplicates removed (%)
8.2
Number of peaks
1231 (qval < 1E-05)

Base call quality data from DBCLS SRA