SRX3010244
GSM2701782: ChIP-seq from vagina (ENCLB483YHJ); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Uterus
Cell type
Vagina
MeSH Description
The genital canal in the female, extending from the UTERUS to the VULVA. (Stedman, 25th ed)

Attributes by original data submitter

Sample

dev stage
adult
sex
female
sample type
tissue
donor ID
ENCDO793LXB
age
53 year
lab
Bradley Bernstein, Broad
tissue
vagina

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
70602085
Reads aligned (%)
89.4
Duplicates removed (%)
4.3
Number of peaks
1664 (qval < 1E-05)

hg19

Number of total reads
70602085
Reads aligned (%)
88.3
Duplicates removed (%)
5.4
Number of peaks
1248 (qval < 1E-05)

Base call quality data from DBCLS SRA