Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ASH2L

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

dev_stage
adult
passage number
5
cell_line
GM12878
sample_type
immortalized cell line
lab
Bradley Bernstein, Broad
age
unknown
donor ID
ENCDO000AAK
health state
unknown
sex
female

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/f35827f6-da4a-42a6-b4bd-9e1b8b6c1663/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
40113785
Reads aligned (%)
97.1
Duplicates removed (%)
11.6
Number of peaks
1222 (qval < 1E-05)

hg19

Number of total reads
40113785
Reads aligned (%)
95.5
Duplicates removed (%)
13.0
Number of peaks
1346 (qval < 1E-05)

Base call quality data from DBCLS SRA