Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

dev stage
adult
cell type
B cell
sex
female
sample type
primary cell
donor ID
ENCDO114AAA
age
43 year
health state
normal
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/eaafee87-23f3-4bb4-adb1-585af01db120/@@download/attachment/ChIP%20New%20General%20ChIP%20Protocol%20041510%20v05.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
24272217
Reads aligned (%)
96.0
Duplicates removed (%)
56.2
Number of peaks
1529 (qval < 1E-05)

hg19

Number of total reads
24272217
Reads aligned (%)
94.2
Duplicates removed (%)
59.8
Number of peaks
398 (qval < 1E-05)

Base call quality data from DBCLS SRA