Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Adipocyte

Cell type

Colon, Transverse

MeSH Description

The segment of LARGE INTESTINE between ASCENDING COLON and DESCENDING COLON. It passes from the RIGHT COLIC FLEXURE across the ABDOMEN, then turns sharply at the left colonic flexure into the descending colon.

Sample

dev_stage

adult

tissue

transverse colon

sample_type

tissue

lab

Bradley Bernstein, Broad

age

53 year

donor ID

ENCDO793LXB

sex

female

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

53752199

Reads aligned (%)

98.0

Duplicates removed (%)

3.4

Number of peaks

1387 (qval < 1E-05)

hg19

Number of total reads

53752199

Reads aligned (%)

96.9

Duplicates removed (%)

4.4

Number of peaks

1107 (qval < 1E-05)