Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KMT2B

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

dev_stage
adult
cell_line
K562
sample_type
immortalized cell line
lab
Bradley Bernstein, Broad
age
53 year
donor ID
ENCDO000AAD
health state
chronic myelogenous leukemia (CML)
sex
female

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/20ebf60b-4009-4a57-a540-8fd93407eccc/@@download/attachment/Epigenomics_CR_ChIP_Protocol_v1.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
33324050
Reads aligned (%)
97.3
Duplicates removed (%)
22.2
Number of peaks
1370 (qval < 1E-05)

hg19

Number of total reads
33324050
Reads aligned (%)
96.3
Duplicates removed (%)
24.0
Number of peaks
1079 (qval < 1E-05)

Base call quality data from DBCLS SRA