Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me2

Cell type

Cell type Class
Liver
Cell type
Hepatocytes
MeSH Description
The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Attributes by original data submitter

Sample

age
5 day
donor ID
ENCDO222AAA
dev stage
embryonic
sample type
in vitro differentiated cells
cell type
hepatocyte
sex
female
health state
healthy
lab
Richard Myers, HAIB

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
30234749
Reads aligned (%)
98.7
Duplicates removed (%)
18.6
Number of peaks
802 (qval < 1E-05)

hg19

Number of total reads
30234749
Reads aligned (%)
97.6
Duplicates removed (%)
19.7
Number of peaks
697 (qval < 1E-05)

Base call quality data from DBCLS SRA