Antigen

Antigen Class

TFs and others

Antigen

CHD1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

dev_stage

adult

passage number

5

cell_line

GM12878

sample_type

immortalized cell line

lab

Bradley Bernstein, Broad

age

unknown

donor ID

ENCDO000AAK

health state

unknown

sex

female

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/f35827f6-da4a-42a6-b4bd-9e1b8b6c1663/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

38989217

Reads aligned (%)

97.3

Duplicates removed (%)

5.2

Number of peaks

1118 (qval < 1E-05)

hg19

Number of total reads

38989217

Reads aligned (%)

96.1

Duplicates removed (%)

6.5

Number of peaks

1239 (qval < 1E-05)