Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rorc

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver
strain
C57BL/6
age
12 weeks old male
antibody
RORg
genotype/variation
Control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA or RNA is extracted using Qiagen kits Library contruction follows illumina kits Standard illumina method was used

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
57618468
Reads aligned (%)
81.0
Duplicates removed (%)
18.0
Number of peaks
7072 (qval < 1E-05)

mm9

Number of total reads
57618468
Reads aligned (%)
80.9
Duplicates removed (%)
18.0
Number of peaks
7026 (qval < 1E-05)

Base call quality data from DBCLS SRA