Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Uterus
Cell type
HEC-1-A
Primary Tissue
Uterus
Site of Extraction
Endometrium
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hec1A cell line, FOXA1-CHIP
cell line
Hec1A
chip antibody
FoxA1 rabbit ab23738 (lot GR292351-2)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
59604276
Reads aligned (%)
3.0
Duplicates removed (%)
96.8
Number of peaks
198 (qval < 1E-05)

hg38

Number of total reads
59604276
Reads aligned (%)
4.3
Duplicates removed (%)
95.5
Number of peaks
258 (qval < 1E-05)

Base call quality data from DBCLS SRA