Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
MNase digested input DNA_differentiated ES cells
cell line
46c ESC (sox1-GFP)
differentiation
5 days to NPCs using NB27 and Neuro2 supplements (GFP facs sorted)
cell type
NPC
chip antibody
MNase digested input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
chromatin was digested with MNase and released at 4C overnight, then histone-DNA complexes were isolated with antibody DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
151909337
Reads aligned (%)
94.7
Duplicates removed (%)
18.0
Number of peaks
413 (qval < 1E-05)

mm9

Number of total reads
151909337
Reads aligned (%)
94.6
Duplicates removed (%)
18.0
Number of peaks
401 (qval < 1E-05)

Base call quality data from DBCLS SRA