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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: L4
ATCC
MeSH
RIKEN BRC
SRX2973383
wtrep1H3K4me3ChIPseq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Larvae
Cell type
L4
NA
NA
Attributes by original data submitter
Sample
strain
N2
isolate
rep1
dev_stage
L4
sex
hermaphrodite
tissue
whole_worm
treatment
H3K4me3ChIPseq
Sequenced DNA Library
library_name
wtrep1H3K4me3ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
24188927
Reads aligned (%)
95.3
Duplicates removed (%)
18.8
Number of peaks
5429 (qval < 1E-05)
ce10
Number of total reads
24188927
Reads aligned (%)
95.3
Duplicates removed (%)
18.8
Number of peaks
5427 (qval < 1E-05)
Base call quality data from
DBCLS SRA