SRX2961795
GSM2687334: dTRIM24 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
MOLM-13
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
AML
cell line
MOLM-13
cell type
acute monocytic leukemia (AML)
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Trim24-DNA complexes were isolated with antibody. Sonicated in bioruptor. Library prep with Rubicon Thruplex DNA-seq.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57570050
Reads aligned (%)
70.9
Duplicates removed (%)
5.5
Number of peaks
849 (qval < 1E-05)

hg19

Number of total reads
57570050
Reads aligned (%)
70.4
Duplicates removed (%)
6.0
Number of peaks
500 (qval < 1E-05)

Base call quality data from DBCLS SRA