Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRIM24

Cell type

Cell type Class
Blood
Cell type
MOLM-13
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
AML
cell line
MOLM-13
cell type
acute monocytic leukemia (AML)
chip antibody
TRIM24 (Bethyl A300-851A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Trim24-DNA complexes were isolated with antibody. Sonicated in bioruptor. Library prep with Rubicon Thruplex DNA-seq.

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
59186462
Reads aligned (%)
47.3
Duplicates removed (%)
36.3
Number of peaks
20487 (qval < 1E-05)

hg38

Number of total reads
59186462
Reads aligned (%)
48.3
Duplicates removed (%)
35.5
Number of peaks
20751 (qval < 1E-05)

Base call quality data from DBCLS SRA