Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TRIM24
wikigenes
PDBj
CellType: MOLM-13
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2961792
GSM2687331: IACS-9571; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TRIM24
Cell type
Cell type Class
Blood
Cell type
MOLM-13
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
source_name
AML
cell line
MOLM-13
cell type
acute monocytic leukemia (AML)
chip antibody
TRIM24 (Bethyl A300-851A)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Trim24-DNA complexes were isolated with antibody. Sonicated in bioruptor. Library prep with Rubicon Thruplex DNA-seq.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
57931000
Reads aligned (%)
50.9
Duplicates removed (%)
33.0
Number of peaks
32091 (qval < 1E-05)
hg38
Number of total reads
57931000
Reads aligned (%)
51.8
Duplicates removed (%)
32.2
Number of peaks
32473 (qval < 1E-05)
Base call quality data from
DBCLS SRA