Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
WM164
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
WM164 melanoma cells
cell line
WM164
chip antibody
H3K4me3 Active motif (39159)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The extraction was done according to active motif enzymatic chip kit(53009) Illumina Truseq ChIP library preparation, with Pippin prep size selection

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
23182935
Reads aligned (%)
79.2
Duplicates removed (%)
81.6
Number of peaks
726 (qval < 1E-05)

hg19

Number of total reads
23182935
Reads aligned (%)
78.4
Duplicates removed (%)
83.1
Number of peaks
607 (qval < 1E-05)

Base call quality data from DBCLS SRA