Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
WM164
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
WM164 melanoma cells
cell line
WM164
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The extraction was done according to active motif enzymatic chip kit(53009) Illumina Truseq ChIP library preparation, with Pippin prep size selection

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
23426510
Reads aligned (%)
98.0
Duplicates removed (%)
6.3
Number of peaks
812 (qval < 1E-05)

hg19

Number of total reads
23426510
Reads aligned (%)
97.1
Duplicates removed (%)
8.3
Number of peaks
694 (qval < 1E-05)

Base call quality data from DBCLS SRA