Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEFs
strain
C57BL/6J
cell type
MEFs
developmental stage
DIV3
genotype/variation
Hcfc2 KO
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Associated DNA were precipitated with IRF2 antibody and purified with QiaQuick purification kit. Libraries were prepared based on Illumina® TruSeq® ChIP Sample Preparation Kit.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
19254346
Reads aligned (%)
97.0
Duplicates removed (%)
12.3
Number of peaks
208 (qval < 1E-05)

mm9

Number of total reads
19254346
Reads aligned (%)
97.0
Duplicates removed (%)
12.4
Number of peaks
191 (qval < 1E-05)

Base call quality data from DBCLS SRA