Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YEATS4

Cell type

Cell type Class
Lung
Cell type
NCI-H1299
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
H1299
cell line
NIH H1299
cell type
non-small cell lung cancer
treatment
--
antibody
Santa Cruz, sc-393708

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq were performed following the protocol: Using ChIP-seq technology to generate high-resolution profiles of histone modifications. O'Geen H, Echipare L, Farnham PJ. Methods Mol Biol. 2011;791:265-86. doi: 10.1007/978-1-61779-316-5_20. Samples were sequenced using the Illumina Solexa Hiseq 2500.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
54306030
Reads aligned (%)
53.3
Duplicates removed (%)
5.0
Number of peaks
1141 (qval < 1E-05)

hg38

Number of total reads
54306030
Reads aligned (%)
54.5
Duplicates removed (%)
3.6
Number of peaks
854 (qval < 1E-05)

Base call quality data from DBCLS SRA