SRX2928234
GSM2671828: Input DNA AOX/NDI1 - day 6 rep 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
mtDNA depleted + ectopic NADH oxidation, input DNA
cell line
HEK293
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated from sonicated formaldehyde-fixed pellets by chromatin immunoprecipitation

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41945370
Reads aligned (%)
75.1
Duplicates removed (%)
3.6
Number of peaks
3145 (qval < 1E-05)

hg19

Number of total reads
41945370
Reads aligned (%)
73.6
Duplicates removed (%)
4.5
Number of peaks
3029 (qval < 1E-05)

Base call quality data from DBCLS SRA