SRX2915390
GSM2666988: T47D Dose PR SC Veh 45mins ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D cells
tissue type
T47D cells
er/pr/her2 status
ER+ PR+
drug treatment
Vehicle
hormone exposure time
45 mins
protocol
ChIP-seq
antibody
Anti-PR SC-7208, Lot#B1115

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were prepared using Kapa ChIP-seq kits. Details of library preparation strategy are provided in the materials and methods section (ChIP and ChIP-seq) of the paper.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
4968317
Reads aligned (%)
91.7
Duplicates removed (%)
8.2
Number of peaks
150 (qval < 1E-05)

hg38

Number of total reads
4968317
Reads aligned (%)
92.2
Duplicates removed (%)
7.7
Number of peaks
103 (qval < 1E-05)

Base call quality data from DBCLS SRA