Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
ER+ breast tumor
tissue type
ER+ breast tumor
er status
positive
pr status
positive
her2 status
negative
her2_notes
negative (0 or 1+)
age
38
type
mixed
grade
III
protocol
ChIP-seq

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
36378894
Reads aligned (%)
102.3
Duplicates removed (%)
42.1
Number of peaks
3025 (qval < 1E-05)

hg38

Number of total reads
36378894
Reads aligned (%)
103.6
Duplicates removed (%)
41.7
Number of peaks
3360 (qval < 1E-05)

Base call quality data from DBCLS SRA