SRX2882959
GSM2649596: LFDHFB male H3K27ac ChIPSeq replicate2 input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

source_name
colon epithelium
tissue
colon epithelium
strain
C57BL/6
Sex
male
chip antibody
none
diet
low fat diet-high fat bacterai

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chip-seq libraries were prepared by Bioo NEXTflex Rapid DNA-seq Kit (cat# 514402).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31827366
Reads aligned (%)
97.1
Duplicates removed (%)
9.3
Number of peaks
201 (qval < 1E-05)

mm9

Number of total reads
31827366
Reads aligned (%)
96.9
Duplicates removed (%)
10.4
Number of peaks
194 (qval < 1E-05)

Base call quality data from DBCLS SRA