SRX2882909
GSM2649546: LFD male H3K4me1 ChIPSeq replicate1 input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

source_name
colon epithelium
tissue
colon epithelium
strain
C57BL/6
Sex
male
chip antibody
none
diet
low fat diet

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chip-seq libraries were prepared by Bioo NEXTflex Rapid DNA-seq Kit (cat# 514402).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51449691
Reads aligned (%)
91.7
Duplicates removed (%)
63.9
Number of peaks
325 (qval < 1E-05)

mm9

Number of total reads
51449691
Reads aligned (%)
91.6
Duplicates removed (%)
64.7
Number of peaks
338 (qval < 1E-05)

Base call quality data from DBCLS SRA