Antigen

Antigen Class

TFs and others

Antigen

Epitope tags

Cell type

Cell type Class

Breast

Cell type

T-47D

Primary Tissue

Breast

Tissue Diagnosis

Adenocarcinoma Ductal

Sample

source_name

T47D

cell line

T47D ExoR330fs

passages

<5

antibody

anti-Ty1 (Menafra et al., 2014)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Libraries were prepared according to BIOO SCIENTIFIC instruction. ATAC-seq libraries were prepared by following the original protocol (Buenrostro et al., 2013) with several modifications (as described above)

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

31134962

Reads aligned (%)

97.6

Duplicates removed (%)

13.2

Number of peaks

1644 (qval < 1E-05)

hg19

Number of total reads

31134962

Reads aligned (%)

96.6

Duplicates removed (%)

13.4

Number of peaks

1542 (qval < 1E-05)