Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic pancreas
NA
NA

Attributes by original data submitter

Sample

source_name
E17.5 Pancreas
developmental stage
E17.5
strain
ICR
antibody
none
tissue
Pancreas

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Neural tube (caudel to midbrain), telencephalon, or limb tissues from E12.5 mouse embryos, or pancreata from E17.5 embryos were dissected and placed in Buffer A (15 mM HEPES pH 7.6, 60 mM KCl, 15 mM NaCl, 0.2 mM EDTA, 0.5 mM EGTA, 0.34 M sucrose) on ice. Nuclei were liberat All libraries were made according to Illumina’s ChIP-seq DNA sample prep protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
34713512
Reads aligned (%)
96.6
Duplicates removed (%)
17.0
Number of peaks
3558 (qval < 1E-05)

mm9

Number of total reads
34713512
Reads aligned (%)
96.3
Duplicates removed (%)
17.0
Number of peaks
3002 (qval < 1E-05)

Base call quality data from DBCLS SRA