Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Hindlimb
MeSH Description
Either of two extremities of four-footed non-primate land animals. It usually consists of a FEMUR; TIBIA; and FIBULA; tarsals; METATARSALS; and TOES. (From Storer et al., General Zoology, 6th ed, p73)

Attributes by original data submitter

Sample

strain
C57BL/6J
replicate
biological replicate 1
dev_stage
E11.5
sex
pooled male and female
tissue
Embryonic Hindlimb Rep 1
genotype
wt
sample_type
genomic DNA
treatment
H3K27ac Chip-Seq

Sequenced DNA Library

library_name
wt_HL_Pitx1_H3K27ac_ChIPseq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
38776710
Reads aligned (%)
99.3
Duplicates removed (%)
6.1
Number of peaks
14621 (qval < 1E-05)

mm9

Number of total reads
38776710
Reads aligned (%)
99.2
Duplicates removed (%)
6.3
Number of peaks
14581 (qval < 1E-05)

Base call quality data from DBCLS SRA