Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela Kyoto cells
chip antibody
none
sirna
mock knock down with siRNA.

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were prepared with Illumina's ChIP Sample Prep Kit according to standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
33968191
Reads aligned (%)
99.0
Duplicates removed (%)
12.2
Number of peaks
1345 (qval < 1E-05)

hg19

Number of total reads
33968191
Reads aligned (%)
98.1
Duplicates removed (%)
13.2
Number of peaks
550 (qval < 1E-05)

Base call quality data from DBCLS SRA