Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YAP1

Cell type

Cell type Class
Liver
Cell type
BEL-7402
NA
NA

Attributes by original data submitter

Sample

source_name
liver cancer cell
cell line
Bel-7402
cell type
Hepatocellular carcinoma
antibodies
anti-YAP (CST #14074)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
HiSeq X Ten

hg19

Number of total reads
29942920
Reads aligned (%)
107.1
Duplicates removed (%)
28.6
Number of peaks
285 (qval < 1E-05)

hg38

Number of total reads
29942920
Reads aligned (%)
108.8
Duplicates removed (%)
28.2
Number of peaks
938 (qval < 1E-05)

Base call quality data from DBCLS SRA