Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFCP2

Cell type

Cell type Class
Liver
Cell type
BEL-7402
NA
NA

Attributes by original data submitter

Sample

source_name
liver cancer cell
cell line
Bel-7402
cell type
Hepatocellular carcinoma
antibodies
anti-TFCP2 (CST #80784)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
HiSeq X Ten

hg19

Number of total reads
23321921
Reads aligned (%)
109.6
Duplicates removed (%)
26.2
Number of peaks
266 (qval < 1E-05)

hg38

Number of total reads
23321921
Reads aligned (%)
111.2
Duplicates removed (%)
25.9
Number of peaks
714 (qval < 1E-05)

Base call quality data from DBCLS SRA