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For hg19
BigWig
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NOTCH1
wikigenes
PDBj
CellType: Aortic valve endothelial cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX285599
GSM1145797: NICDmyc ChIP; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NOTCH1
Cell type
Cell type Class
Cardiovascular
Cell type
Aortic valve endothelial cells
NA
NA
Attributes by original data submitter
Sample
source_name
aortic valve endothelial cells
cell type
Primary aortic valve endothelial cells
passage
p8
chip antibody
anti-myc tag (myc-Notch)
chip antibody manufacturer
Abcam
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated by phenol/chloroform/isoamylalcohol. ChIPs were done in triplicate with Protein G magnetic beads and then pooled for subsequent ChIP-seq library preparation with the standard Illumina ChIP-seq library protocol.
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
29707270
Reads aligned (%)
86.5
Duplicates removed (%)
10.6
Number of peaks
1261 (qval < 1E-05)
hg38
Number of total reads
29707270
Reads aligned (%)
88.6
Duplicates removed (%)
9.3
Number of peaks
998 (qval < 1E-05)
Base call quality data from
DBCLS SRA