SRX285598
GSM1145796: NICDmyc Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Aortic valve endothelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
aortic valve endothelial cells
cell type
Primary aortic valve endothelial cells
passage
p8
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated by phenol/chloroform/isoamylalcohol. ChIPs were done in triplicate with Protein G magnetic beads and then pooled for subsequent ChIP-seq library preparation with the standard Illumina ChIP-seq library protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28542299
Reads aligned (%)
95.3
Duplicates removed (%)
3.4
Number of peaks
473 (qval < 1E-05)

hg19

Number of total reads
28542299
Reads aligned (%)
94.1
Duplicates removed (%)
3.9
Number of peaks
718 (qval < 1E-05)

Base call quality data from DBCLS SRA