Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

M1L organoid

strain

C57BL/6

cell type

Mouse PDA liver metastasis (M1L)

antibody

Ipt genomic DNA

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were prepared from ~1 millon single cell dissociated of organoid cultures, or ~5 million of monolayer cultures. Sonicated nuclei with Bioruptor were further proceeded to ChIP assay with apporiate antibodies. Libraries were prepared according to Illumina's instructions of TruSeq ChIP Sample Prep kit.

Sequencing Platform

instrument_model

NextSeq 500

mm10

Number of total reads

39332316

Reads aligned (%)

97.9

Duplicates removed (%)

17.8

Number of peaks

458 (qval < 1E-05)

mm9

Number of total reads

39332316

Reads aligned (%)

97.5

Duplicates removed (%)

17.7

Number of peaks

513 (qval < 1E-05)