SRX283938
GSM1145586: input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES-cell derived neurons
originating cell type
ES-D3 from ATCC
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40281380
Reads aligned (%)
96.8
Duplicates removed (%)
43.3
Number of peaks
599 (qval < 1E-05)

mm9

Number of total reads
40281380
Reads aligned (%)
96.5
Duplicates removed (%)
43.3
Number of peaks
654 (qval < 1E-05)

Base call quality data from DBCLS SRA