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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K36me3
wikigenes
PDBj
CellType: S2
ATCC
MeSH
RIKEN BRC
SRX2832099
GSM2630596: KDM4ARNAi H3K36Me3ChIP3 filtered.fastq.gz; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K36me3
Cell type
Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage
Attributes by original data submitter
Sample
source_name
Drosophila S2 cells
tissue
embryonic
cell type
S2
antibody
H3K36Me3
treatment
KDM4ARNAi
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
chromatin crosslinking with 1% paraformaldehyde for 10 minutes, shearing with Bioruptor sonicator (30 cycles), immunoprecipitation with anti-H3K9me3 or anti-H3K36me3 antibodies with Protein-A Dynabeads standard Illumina TruSeq protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
16775702
Reads aligned (%)
97.9
Duplicates removed (%)
30.0
Number of peaks
10496 (qval < 1E-05)
dm3
Number of total reads
16775702
Reads aligned (%)
98.0
Duplicates removed (%)
28.6
Number of peaks
10892 (qval < 1E-05)
Base call quality data from
DBCLS SRA