Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Adult
Cell type
Testis

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Testes, bam-, input
genotype/variation
bam-
tissue
Testis
age
Within 3 days of eclosion
chip antibody
none

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Testes were dissected in cold PBS, fixed, sonicated, and clarified lysates were used for ChIP with specific antibodies. Libraries were prepared with the NEXTflex ChIPseq Kit (Bioo Scientific) according to manufacturer's suggestions.

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
16060245
Reads aligned (%)
95.3
Duplicates removed (%)
65.7
Number of peaks
1927 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA