Antigen

Antigen Class

TFs and others

Antigen

AR

Cell type

Cell type Class

Prostate

Cell type

VCaP

Primary Tissue

Prostate

Tissue Diagnosis

Carcinoma

Sample

source_name

VCaP

cell line

VCaP

doxycycline

-

chip antibody

anti-AR (ab108341)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody DNA libraries were prepared for sequencing using standard Illumina protocols by MSKCC Integrated Genomics Operation core

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

35428981

Reads aligned (%)

86.2

Duplicates removed (%)

11.2

Number of peaks

31842 (qval < 1E-05)

hg19

Number of total reads

35428981

Reads aligned (%)

85.4

Duplicates removed (%)

11.3

Number of peaks

32480 (qval < 1E-05)