Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERF

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP
cell line
VCaP
doxycycline
+
chip antibody
anti-ERF (PA5-30237)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody DNA libraries were prepared for sequencing using standard Illumina protocols by MSKCC Integrated Genomics Operation core

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
64091533
Reads aligned (%)
180.9
Duplicates removed (%)
4.6
Number of peaks
16151 (qval < 1E-05)

hg38

Number of total reads
51385344
Reads aligned (%)
187.4
Duplicates removed (%)
4.3
Number of peaks
13615 (qval < 1E-05)

Base call quality data from DBCLS SRA