Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
Akata
NA
NA

Attributes by original data submitter

Sample

source_name
Akata-Zta cells
cell line
Akata-ZTA
pathogen
Epstein-Barr virus
chip antibody
BRD4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
18E6 cells were collected, and ChIP was performed as described in the paper. Deep sequencing libraries were prepared by adaptor-mediated amplification using Ovation Ultralow Library System V2 (NuGEN).

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
39458090
Reads aligned (%)
72.2
Duplicates removed (%)
24.5
Number of peaks
1377 (qval < 1E-05)

hg38

Number of total reads
39458090
Reads aligned (%)
74.7
Duplicates removed (%)
23.2
Number of peaks
928 (qval < 1E-05)

Base call quality data from DBCLS SRA