Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
Akata
NA
NA

Attributes by original data submitter

Sample

source_name
Akata-Zta cells
cell line
Akata-ZTA
pathogen
Epstein-Barr virus
chip antibody
BRD4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
18E6 cells were collected, and ChIP was performed as described in the paper. Deep sequencing libraries were prepared by adaptor-mediated amplification using Ovation Ultralow Library System V2 (NuGEN).

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
61488723
Reads aligned (%)
69.2
Duplicates removed (%)
28.2
Number of peaks
1524 (qval < 1E-05)

hg38

Number of total reads
61488723
Reads aligned (%)
71.6
Duplicates removed (%)
26.5
Number of peaks
1180 (qval < 1E-05)

Base call quality data from DBCLS SRA