Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMNB1

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblast
NA
NA

Attributes by original data submitter

Sample

source_name
Skin fibroblasts with endogenous LMNA p.R482W mutation, lamin B1 ChIP
cell type
skin fibroblast
passages
Cells in passages 5-8
differentiation stage
Cultured in proliferative state
chip antibody
anti-lamin B1 (rabbit polyclonal; Abcam, cat# 16048)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
66111842
Reads aligned (%)
91.4
Duplicates removed (%)
51.2
Number of peaks
532 (qval < 1E-05)

hg38

Number of total reads
66111842
Reads aligned (%)
94.3
Duplicates removed (%)
50.3
Number of peaks
1629 (qval < 1E-05)

Base call quality data from DBCLS SRA