Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED12

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7_Med12_ChIP-seq
cell line
MCF-7
cell type
breast adenocarcinoma cells
chip antibody
Med12
chip antibody vendor
Bethyl

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
44010631
Reads aligned (%)
43.3
Duplicates removed (%)
55.5
Number of peaks
1118 (qval < 1E-05)

hg38

Number of total reads
44010631
Reads aligned (%)
45.2
Duplicates removed (%)
53.9
Number of peaks
791 (qval < 1E-05)

Base call quality data from DBCLS SRA